PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10010820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family C2H2
Protein Properties Length: 279aa    MW: 30203.2 Da    PI: 9.7677
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10010820genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-056688123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Lus10010820 66 FVCEICSKGFQRDQNLQLHRRGH 88
                 89*******************88 PP

2zf-C2H2171.7e-05142164123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  Lus10010820 142 WKCERCTKKYAVQSDWKAHMKTC 164
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.9E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-76588No hitNo description
SMARTSM003550.0366688IPR015880Zinc finger, C2H2-like
PfamPF128740.0156688No hitNo description
PROSITE profilePS5015710.8876688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355210107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-5130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.07E-7137163No hitNo description
SMARTSM0035591142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAEVENSSKV TVSAAAALSG EANSVSSFGN QPTTTTKKKR NLPGMPDPEA EVIALSPVSL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLKQRSSK ELRKRVYVCP EPSCVHHDPA  120
RALGDLTGIK KHFCRKHGEK KWKCERCTKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR  180
DSFITHRAFC DALAEESIRS NNAPRTVTNS NPSPTVVASP PPPPHTPSTN VVSPGNSVQS  240
SGLAENNPAA LASPPATTTA GVTNTNFTCT ASPTNVFA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012071808.11e-132PREDICTED: protein indeterminate-domain 2-like
RefseqXP_012071807.11e-132PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-119IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A067L2Z91e-132A0A067L2Z9_JATCU; Uncharacterized protein
STRINGPOPTR_0014s17900.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-120indeterminate(ID)-domain 2